{ "_id": "6a1d490d1d7bb097a0a42c18", "Package": "r2glmm", "Type": "Package", "Title": "Computes R Squared for Mixed (Multilevel) Models", "Date": "2025-04-28", "Version": "0.1.3", "Authors@R": "person(\"Byron\", \"Jaeger\", email = \"byron.jaeger@gmail.com\", role = c(\"aut\", \"cre\"))", "Description": "The model R squared and semi-partial R squared for the\nlinear and generalized linear mixed model (LMM and GLMM) are\ncomputed with confidence limits. The R squared measure from\nEdwards et.al (2008) is extended to the\nGLMM using penalized quasi-likelihood (PQL) estimation (see\nJaeger et al. 2016 ). Three\nmethods of computation are provided and described as follows.\nFirst, The Kenward-Roger approach. Due to some inconsistency\nbetween the 'pbkrtest' package and the 'glmmPQL' function, the\nKenward-Roger approach in the 'r2glmm' package is limited to\nthe LMM. Second, The method introduced by Nakagawa and\nSchielzeth (2013) and\nlater extended by Johnson (2014) .\nThe 'r2glmm' package only computes marginal R squared for the\nLMM and does not generalize the statistic to the GLMM; however,\nconfidence limits and semi-partial R squared for fixed effects\nare useful additions. Lastly, an approach using standardized\ngeneralized variance (SGV) can be used for covariance model\nselection. Package installation instructions can be found in\nthe readme file.", "License": "GPL-2", "RoxygenNote": "7.3.2", "URL": "https://github.com/bcjaeger/r2glmm", "BugReports": "https://github.com/bcjaeger/r2glmm/issues", "Config/pak/sysreqs": "cmake make libicu-dev", "Repository": "https://bcjaeger.r-universe.dev", "Date/Publication": "2025-04-28 14:02:50 UTC", "RemoteUrl": "https://github.com/bcjaeger/r2glmm", "RemoteRef": "HEAD", "RemoteSha": "f19be6656fbf38d31539a8e93d09d31d27890476", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-01 08:50:23 UTC", "User": "root" }, "Author": "Byron Jaeger [aut, cre]", "Maintainer": "Byron Jaeger ", "MD5sum": "7a6590eab34a1b41a85a6ff0fd934985", "_user": "bcjaeger", "_type": "src", "_file": "r2glmm_0.1.3.tar.gz", "_fileid": "2f07419715dbbb7e9a34153f55cc9374a030d7533d93699a16e040c1a9211ef7", "_filesize": 137121, "_sha256": "2f07419715dbbb7e9a34153f55cc9374a030d7533d93699a16e040c1a9211ef7", "_created": "2026-06-01T08:50:23.000Z", "_published": "2026-06-01T08:55:41.177Z", "_distro": "noble", "_jobs": [ { "job": 78817645361, "time": 285, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7327279371" }, { "job": 78817645351, "time": 189, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7327246747" }, { "job": 78817645401, "time": 173, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7327232271" }, { "job": 78817645393, "time": 226, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7327250266" }, { "job": 78817126608, "time": 191, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7327184085" }, { "job": 78817645366, "time": 124, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7327224853" }, { "job": 78817645344, "time": 98, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7327216876" }, { "job": 78817645430, "time": 75, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7327209835" }, { "job": 78817645343, "time": 76, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7327210029" } ], "_buildurl": "https://github.com/r-universe/bcjaeger/actions/runs/26744692213", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bcjaeger/r2glmm", "_commit": { "id": "f19be6656fbf38d31539a8e93d09d31d27890476", "author": "Byron Jaeger ", "committer": "Byron Jaeger ", "message": "update date\n", "time": 1745848970 }, "_maintainer": { "name": "Byron Jaeger", "email": "byron.jaeger@gmail.com", "login": "bcjaeger", "description": "Director of Data Analytics at Perisphere Real World Evidence", "uuid": 11821781 }, "_registered": true, "_dependencies": [ { "package": "mgcv", "role": "Imports" }, { "package": "Matrix", "role": "Imports" }, { "package": "pbkrtest", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "afex", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "MASS", "role": "Imports" }, { "package": "gridExtra", "role": "Imports" }, { "package": "grid", "role": "Imports" }, { "package": "lme4", "role": "Suggests" }, { "package": "nlme", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" }, { "package": "data.table", "role": "Suggests" }, { "package": "dplyr", "role": "Suggests" }, { "package": "lmerTest", "role": "Suggests" } ], "_owner": "bcjaeger", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 16, "_contributors": [ { "user": "bcjaeger", "count": 47, "uuid": 11821781 } ], "_userbio": { "uuid": 11821781, "type": "user", "name": "Byron", "description": "Director of Data Analytics at Perisphere Real World Evidence" }, "_downloads": { "count": 993, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/r2glmm" }, "_mentions": 40, "_devurl": "https://github.com/bcjaeger/r2glmm", "_searchresults": 291, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/r2glmm.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/bcjaeger/r2glmm", "_realowner": "bcjaeger", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2016-09-15" }, { "version": "0.1.1", "date": "2016-11-28" }, { "version": "0.1.2", "date": "2017-08-05" }, { "version": "0.1.3", "date": "2025-04-28" } ], "_exports": [ "calc_sgv", "cmp_R2", "glmPQL", "is.CompSym", "make.partial.C", "pqlmer", "r2beta", "r2dt" ], "_help": [ { "page": "calc_sgv", "title": "Compute the standardized generalized variance (SGV) of a blocked diagonal matrix.", "topics": [ "calc_sgv" ] }, { "page": "cmp_R2", "title": "Compute R2 with a specified C matrix", "topics": [ "cmp_R2" ] }, { "page": "glmPQL", "title": "Compute PQL estimates for fixed effects from a generalized linear model.", "topics": [ "glmPQL" ] }, { "page": "is.CompSym", "title": "Checks if a matrix is Compound Symmetric.", "topics": [ "is.CompSym" ] }, { "page": "make.partial.C", "title": "Generate partial contrast matrices", "topics": [ "make.partial.C" ] }, { "page": "plot.R2", "title": "Visualize standardized effect sizes and model R squared", "topics": [ "plot.R2" ] }, { "page": "pqlmer", "title": "pqlmer", "topics": [ "pqlmer" ] }, { "page": "print.R2", "title": "Print the contents of an R2 object", "topics": [ "print.R2" ] }, { "page": "r2beta", "title": "r2beta Compute R Squared for Mixed Models", "topics": [ "r2beta" ] }, { "page": "r2dt", "title": "R Squared Difference Test (R2DT). Test for a statistically significant difference in generalized explained variance between two candidate models.", "topics": [ "r2dt" ] } ], "_readme": "https://github.com/bcjaeger/r2glmm/raw/HEAD/README.md", "_rundeps": [ "abind", "afex", "backports", "boot", "broom", "car", "carData", "cli", "colorspace", "cowplot", "cpp11", "Deriv", "doBy", "dplyr", "farver", "forecast", "Formula", "fracdiff", "generics", "ggplot2", "glue", "gridExtra", "gtable", "isoband", "labeling", "lattice", "lifecycle", "lme4", "lmerTest", "lmtest", "magrittr", "MASS", "Matrix", "MatrixModels", "mgcv", "microbenchmark", "minqa", "modelr", "nlme", "nloptr", "nnet", "numDeriv", "pbkrtest", "pillar", "pkgconfig", "plyr", "purrr", "quantreg", "R6", "rbibutils", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "Rdpack", "reformulas", "reshape2", "rlang", "S7", "scales", "SparseM", "stringi", "stringr", "survival", "tibble", "tidyr", "tidyselect", "timeDate", "urca", "utf8", "vctrs", "viridisLite", "withr", "zoo" ], "_score": 6.366982975977852, "_indexed": true, "_nocasepkg": "r2glmm", "_universes": [ "bcjaeger" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.3", "date": "2026-06-01T08:55:03.000Z", "distro": "noble", "commit": "f19be6656fbf38d31539a8e93d09d31d27890476", "fileid": "26b1bc2f73bb935569e6a93fb583705d95c1cc0b8355eb13babd2aef67ef9da9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bcjaeger/actions/runs/26744692213" }, { "r": "4.6.0", "os": "linux", "version": "0.1.3", "date": "2026-06-01T08:53:25.000Z", "distro": "noble", "commit": "f19be6656fbf38d31539a8e93d09d31d27890476", "fileid": "196ed4adf451b2857b0acfdcf41abb1a761f6bfbf438e6d842737b096a556474", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bcjaeger/actions/runs/26744692213" }, { "r": "4.5.3", "os": "mac", "version": "0.1.3", "date": "2026-06-01T08:52:46.000Z", "commit": "f19be6656fbf38d31539a8e93d09d31d27890476", "fileid": "c12231455cbc3d6bd95c55a3d677fd71bbeb72ebaa2959c7bbec64da81ed3516", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bcjaeger/actions/runs/26744692213" }, { "r": "4.6.0", "os": "mac", "version": "0.1.3", "date": "2026-06-01T08:53:39.000Z", "commit": "f19be6656fbf38d31539a8e93d09d31d27890476", "fileid": "30584cc8fc931f5ee488a5ac37f2220bbd25ba71b4db27106f07aabe6204359f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bcjaeger/actions/runs/26744692213" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.3", "date": "2026-06-01T08:52:39.000Z", "commit": "f19be6656fbf38d31539a8e93d09d31d27890476", "fileid": "1f606540124c5d253cd7b9d6b865e3ba305c15c721434398ff52506ffcc7810d", "status": "success", "buildurl": "https://github.com/r-universe/bcjaeger/actions/runs/26744692213" }, { "r": "4.7.0", "os": "win", "version": "0.1.3", "date": "2026-06-01T08:51:53.000Z", "commit": "f19be6656fbf38d31539a8e93d09d31d27890476", "fileid": "8b8fcd0334f1a8e0e3dad8f6885866bbb038fcd224ba8dc864ff0f81f9783555", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bcjaeger/actions/runs/26744692213" }, { "r": "4.5.3", "os": "win", "version": "0.1.3", "date": "2026-06-01T08:51:33.000Z", "commit": "f19be6656fbf38d31539a8e93d09d31d27890476", "fileid": "f7887b5c469d9d32d277b30f61f39ee3fdc012149d9ea4e8b7e2a6bc75ecdd4a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bcjaeger/actions/runs/26744692213" }, { "r": "4.6.0", "os": "win", "version": "0.1.3", "date": "2026-06-01T08:51:32.000Z", "commit": "f19be6656fbf38d31539a8e93d09d31d27890476", "fileid": "50487bdfb109965184bcfdfc5b54cdb045f3f2aa3b051c02bfb8c3663967854a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bcjaeger/actions/runs/26744692213" } ] }